Welcome to EMASE’s documentation!

Contents:

• Overview
  • EMASE: Expectation-Maximization algorithm for Allele Specific Expression
• Installation
• Usage
  • To use EMASE in a new project
  • To run EMASE on command line
• Real Use Cases
  • Estimating allele-specific expression from human RNA-seq data
  • Estimating allele-specific binding from ChIP-seq data
  • Deconvolving human and mouse gene expression from Patient-Derived Xenograft (PDX) models
  • Estimating allele-specific expression from a F1 sample
• Modules
  • emase Package
  • AlignmentMatrixFactory Module
  • Sparse3DMatrix Module
  • AlignmentPropertyMatrix Module
  • EMfactory Module
• History
  • 0.10.16 (05-10-2016)
  • 0.10.15 (05-04-2016)
  • 0.10.14 (04-25-2016)
  • 0.10.12 (04-22-2016)
  • 0.10.11 (02-15-2016)
  • 0.10.9 (02-09-2016)
  • 0.10.5 (01-20-2016)
  • 0.10.3 (01-06-2016)
  • 0.10.2 (01-04-2016)
  • 0.9.10 (01-04-2016)
  • 0.9.8 (07-31-2015)
  • 0.9.7 (07-28-2015)
  • 0.9.6 (06-02-2015)
  • 0.9.5 (05-17-2015)
  • 0.9.4 (02-23-2015)
  • 0.9.3 (02-22-2015)
  • 0.9.2 (02-17-2015)
  • 0.9.0 (01-31-2015)
• Credits
  • Development Lead
  • Contributors
• Contributing
  • Types of Contributions
  • Get Started!
  • Pull Request Guidelines
  • Tips

Indices and tables

• Index
• Module Index